Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846913.1_cds_XP_016509823.1_22726
CDS Infomation

[gene=LOC107827239] [db_xref=GeneID:107827239] [protein=putative late blight resistance protein homolog R1A-10] [protein_id=XP_016509823.1] [location=complement(join(5604..5623,6045..6479,7116..8244))] [gbkey=CDS]
Sequence

ATGTTTAATGATCCCTCAATTGTGAGCTTCTTTGATGTTCGTGGATGGGTTACTGTATCC
GAGGACTACAATTTAAGAAAGATGCTTCTATCCCTCCTTCAAGATGTTGGGGTAAATGCG
GAGCTTGATAAGAAAAGCGATATTGGAGAACACAGTGAAGAAGAAGAAGAAGAAGGAGAA
GGAGGAGGAGGAGGAGGAGGAGGACAAGAAGAAGAAGGTAACTTGAAGAAGAAGAAAAAG
AAGATAAGTGATGTACAACTAGCAAATCGCATGCAGAAAAGCGATGGAGAACTAGCAGAT
CGCTTGCAAAAAAGTTTAAAAGGTAGGAGGTATTTGATTGTTGTGGATGACATATGGAGC
ACAGAAGCTTGGGATGAGTTTAGGCTATGGTTTCCAGAATACAATAATAGAAGTCGGATA
TTATTGACTACTCGAGACATTAAGGTTGCTCAATATGCTAGCTATCCTAGGGATCCTTCT
CCAATGCGTTTCCTGAAGCCAGAGGAAAGTTGGACTTTATTTTGCCAAAAGGCATTTGAC
CAAAAAGTCTGTCCAATTGAATTTGAGAATATTGCAAGGGAAGTTGTGAAAAATTGCAAT
GGATTACCACTGATGATTTCTGTGGTTGCAGGGGCTCTATCTAGCAAGAGGACAGTGGAT
GAGTGGAGGAAAGTAGCTCAAAGTGTGAGTTTGTTAGTAAATCTTGATGATTATCAACGC
TGCTCAAGAGTGCTCGCTTTGAGCTACAATCATCTTCCGTCTCATTTGAAAGCTTGCTTT
CTGTATTTTGGAGTTTTTCCGAAAGCAAGTGAGATTTCTGTGAAGAAGTTGATTAGATTA
TGGGTTGCCGAAGGATTCCTGGAGCTGAAGGGGTTTGAGGGATTGGAAAAAGTGGCTACT
AGTCTTTTAAGTAATCTTATTGATAAAAGTCTAGTTGTTGTTGGTAAGCGAAGTTTGAAT
GACAAAATCAAGACATGTAGGATTCATGATCTTCTGCACGATTTTTGCTTGAGAGAGGCT
GAAAACGAGAATCTCTTGTATGTTACAGAAACGCCGGTGAGTACATATGAAGGATCTAGA
AAGGTTTCCTCTCAAGTTCGTCGGTGGGTGTCAGTTTATCCAAAGGACGGTTCCTTTCCA
CCAAATCTCAAGAAGCTGACACTTTGCTGCACATTTTTACTGTGGAAGGACATGACAATC
GTTAGCATGCTGCCCAAACTCGAGGTACTCCAGTTGAGGAATAATGCCTTTGTACCAAAC
ATCGGCTGGAAAGTAACAGAGATGCAATTTCCTAAATTGAAATTCCTGCTCCTCGAGCAG
TTGAATATTAAATATTGGAGAGCCACTGATGATTGTTTCCCATGCCTTGAGCGTATAATT
ATAAGAAATTGCAGGTTTTTAATAGAGATTCCCCAAGAATTTGCAGATAGTATGACACTG
CAGCTAATTGAGTTACATCAATGTTCTCCTTCCCTTGTGAATTCTGCTGAGCTGATCCAG
AAAGAGCAATTGGAGAGTTTGGGGAATAACATGCTTAAAGTTTATGCCTTTGACACCATT
AAATGGAGAATCTGGGAAGAATAG

Peptide Sequence

PEP ID

XP_016509823.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana tabacum]
Sequence

MFNDPSIVSFFDVRGWVTVSEDYNLRKMLLSLLQDVGVNAELDKKSDIGEHSEEEEEEGE
GGGGGGGGQEEEGNLKKKKKKISDVQLANRMQKSDGELADRLQKSLKGRRYLIVVDDIWS
TEAWDEFRLWFPEYNNRSRILLTTRDIKVAQYASYPRDPSPMRFLKPEESWTLFCQKAFD
QKVCPIEFENIAREVVKNCNGLPLMISVVAGALSSKRTVDEWRKVAQSVSLLVNLDDYQR
CSRVLALSYNHLPSHLKACFLYFGVFPKASEISVKKLIRLWVAEGFLELKGFEGLEKVAT
SLLSNLIDKSLVVVGKRSLNDKIKTCRIHDLLHDFCLREAENENLLYVTETPVSTYEGSR
KVSSQVRRWVSVYPKDGSFPPNLKKLTLCCTFLLWKDMTIVSMLPKLEVLQLRNNAFVPN
IGWKVTEMQFPKLKFLLLEQLNIKYWRATDDCFPCLERIIIRNCRFLIEIPQEFADSMTL
QLIELHQCSPSLVNSAELIQKEQLESLGNNMLKVYAFDTIKWRIWEE

Transcript Sequence

Gene sequence data has not been registered.